Heng Li
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0f5608c4a4
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r1028: backport minigraph -U
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2021-05-01 15:41:39 -04:00 |
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Heng Li
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e8823a3709
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r1027: renamed hifi to map-hifi; changed default
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2021-05-01 15:22:51 -04:00 |
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Heng Li
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b6ff332de1
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Release minimap2-2.18 (r1015)
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2021-04-09 13:33:34 -04:00 |
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Heng Li
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1c4b7e8a48
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explained --junc-bed in README
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2021-03-06 19:44:24 -05:00 |
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Heng Li
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f995f55610
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added --mask-len for #659
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2020-08-21 11:12:50 -04:00 |
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Heng Li
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9dceae59a0
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r972: renamed --alt-diff to --alt-drop
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2020-01-21 10:33:39 -05:00 |
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Heng Li
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eb3ed6993d
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support ALT mapping
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2020-01-21 09:17:50 -05:00 |
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Heng Li
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040f74102c
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r965: added --chain-gap-scale for #540
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2020-01-18 10:29:33 -05:00 |
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Heng Li
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e026e18439
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added the description of "SA" tag. Closes #438
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2019-07-01 09:18:33 -04:00 |
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Heng Li
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7bc87b4175
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Release minimap2-2.17 (r941)
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2019-05-04 23:49:17 -04:00 |
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Heng Li
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6762368cf0
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r940: added the splice:hq preset
for high-quality CCS/mRNA splice alignment
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2019-05-04 14:00:31 -04:00 |
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Heng Li
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c2aec88b84
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r938: added --sam-hit-only; resolved #377
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2019-04-30 22:40:36 -04:00 |
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Heng Li
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49c6d83a8e
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r934: --junc-bed to read BED12
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2019-04-28 20:12:28 -04:00 |
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Heng Li
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f64e426a5a
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r933: resume versioning
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2019-04-28 17:05:37 -04:00 |
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Heng Li
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2bb8cbbeef
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updated manpage
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2019-04-28 17:02:49 -04:00 |
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Heng Li
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169216bfff
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manpage was wrongly marked as "dirty"
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2019-02-28 15:58:12 -05:00 |
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Heng Li
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6b391e3373
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Release minimap2-2.16 (r922)
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2019-02-28 15:49:24 -05:00 |
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Heng Li
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55e39c2d30
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r921: output unmapped reads in full PAF
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2019-02-27 15:03:19 -05:00 |
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Heng Li
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d431dc0181
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r917: added --max-chain-iter to avoid worst case
Resolves #324
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2019-02-27 14:41:01 -05:00 |
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Heng Li
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1739a260fb
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r913: output tag "rl", length of unseedable regs
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2019-02-05 14:19:17 -05:00 |
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Heng Li
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8b05880f73
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r911: option -o to output to file (#319)
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2019-01-29 10:42:20 -05:00 |
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Heng Li
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c404f49569
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Release minimap2-2.15 (r905)
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2019-01-10 12:34:45 -05:00 |
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Heng Li
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ea2b1c5b2a
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r894: added --max-qlen to filter out long query
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2018-12-12 12:27:32 -05:00 |
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Heng Li
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128476efc9
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r891: compute gap-compressed divergence
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2018-11-24 21:50:49 -05:00 |
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Heng Li
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59f23f7579
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Release minimap2-2.14 (r883)
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2018-11-06 00:03:16 -05:00 |
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Heng Li
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1ede8ca170
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r877: renamed cap-sw-mat to cap-sw-mem
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2018-11-05 11:46:38 -05:00 |
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Heng Li
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13981404e2
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r876: skip DP if taking too much RAM (#259)
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2018-11-05 11:43:10 -05:00 |
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Heng Li
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2ceba22a7a
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fixed a typo in manpage
|
2018-10-28 11:51:02 -04:00 |
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Heng Li
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ecb6c5c36c
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Document --no-pairing (#256)
|
2018-10-23 10:00:21 -04:00 |
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Heng Li
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5d5d392c02
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Release minimap2-2.13 (r850)
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2018-10-11 13:18:31 -04:00 |
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Heng Li
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1077b7ddc8
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r846: added --hard-mask-level for #244
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2018-09-27 14:46:26 -04:00 |
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Heng Li
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a5eafb75f9
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Release minimap2-2.12 (r827)
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2018-08-06 12:44:39 -04:00 |
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Heng Li
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5ab6538757
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r822: added option --no-end-flt
|
2018-08-05 19:42:12 -04:00 |
|
Heng Li
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395c8d678a
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r815: fixed a memory leak
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2018-07-15 22:11:32 -04:00 |
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Heng Li
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0517972d02
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Release minimap2-2.11 (r797)
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2018-06-21 00:04:08 -04:00 |
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Heng Li
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154d2caf5b
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r784: support the =/X CIGAR operators (#156)
|
2018-05-30 16:11:22 -04:00 |
|
Heng Li
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734ac379bb
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r770: matching N bases not working properly (#155)
|
2018-04-30 19:55:23 -04:00 |
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Heng Li
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aef7b0744c
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r768: shortened preset; added dv tag (#25)
Also added asm20 to command line help (#151)
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2018-04-24 12:48:54 -04:00 |
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Heng Li
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2d7ec75d50
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Release minimap2-2.10 (r761)
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2018-03-27 11:45:44 -04:00 |
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Heng Li
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5ef9580b17
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r753: change bandwidth in ava-ont to 2000bp
|
2018-03-23 10:15:23 -04:00 |
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Heng Li
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08bd2123b6
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r752: option to copy comments to output (#136)
|
2018-03-23 10:04:33 -04:00 |
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Heng Li
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8766d286df
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r751: optionally output MD (#118)
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2018-03-22 14:15:33 -04:00 |
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Heng Li
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d135feb1a5
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response to reviewers' comments, round 2
|
2018-03-15 21:59:57 -04:00 |
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Heng Li
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bdc615c1d4
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r741: added --min-occ-floor to improve #107
|
2018-03-12 14:32:27 -04:00 |
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Heng Li
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eeb314edd6
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Release minimap2-2.9 (r720)
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2018-02-24 09:31:09 -05:00 |
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Heng Li
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54a42aafe5
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keep documents in sync
|
2018-02-15 17:21:09 -05:00 |
|
Heng Li
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997ab9bb2e
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Fixed the description of --dual
|
2018-02-01 15:11:51 -05:00 |
|
Heng Li
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53ce317e59
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Release minimap2-2.8 (r672)
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2018-02-01 12:50:20 -05:00 |
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Heng Li
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da6947cfa3
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r671: cleanup command line options
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2018-01-31 13:59:52 -05:00 |
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Heng Li
|
6205fa6f21
|
document --heap-sort
|
2018-01-26 15:15:40 -05:00 |