Heng Li
|
734028f92b
|
validate z-drop
|
2017-06-27 11:25:39 -04:00 |
|
Heng Li
|
c02ff4662c
|
r85: two-round z-drop
|
2017-06-27 10:36:24 -04:00 |
|
Heng Li
|
5b614ae828
|
r78: fixed a split bug
|
2017-06-26 14:45:23 -04:00 |
|
Heng Li
|
de54c9dac2
|
r77: fixed an index loading bug (offset not set)
|
2017-06-26 13:56:25 -04:00 |
|
Heng Li
|
24d7f7f8b1
|
disabled dynamic banding; buggy
|
2017-06-25 22:43:15 -04:00 |
|
Heng Li
|
39083be9ab
|
separated formating printing
for SAM in future; and for performance
|
2017-06-25 16:13:54 -04:00 |
|
Heng Li
|
7780ab792a
|
removed some comment lines
|
2017-06-25 11:53:35 -04:00 |
|
Heng Li
|
56364200c8
|
avoid contained hits due to split
|
2017-06-25 11:43:50 -04:00 |
|
Heng Li
|
f20d550a59
|
fixed the NM bug
due to reversed CIGAR
|
2017-06-25 11:24:39 -04:00 |
|
Heng Li
|
b261a4a74b
|
zdrop sort of works, but has issues
left and right extensions are different; NM is also wrong
|
2017-06-25 10:52:14 -04:00 |
|
Heng Li
|
72dfb0c99e
|
fixed a bug in ksw2
|
2017-06-25 10:22:13 -04:00 |
|
Heng Li
|
ef5dd318ca
|
implemented chain splitting; NOT tested!!!
|
2017-06-24 22:57:43 -04:00 |
|
Heng Li
|
aa5881e7bb
|
backup
|
2017-06-24 22:51:31 -04:00 |
|
Heng Li
|
d08b58d21f
|
minor
|
2017-06-24 19:33:59 -04:00 |
|
Heng Li
|
672782f03a
|
simplified hp_len a little
|
2017-06-24 19:27:58 -04:00 |
|
Heng Li
|
2d8fda9586
|
an alternative strategy to fix for HPC
it makes the result better, but still not quite right.
|
2017-06-24 09:26:24 -04:00 |
|
Heng Li
|
6088dc11ff
|
wrong SW score
|
2017-06-23 23:24:49 -04:00 |
|
Heng Li
|
2987be288c
|
output cigar
|
2017-06-23 22:53:47 -04:00 |
|
Heng Li
|
35b84f88c6
|
backup
|
2017-06-23 22:42:15 -04:00 |
|
Heng Li
|
523a8832ad
|
backup
|
2017-06-23 20:57:17 -04:00 |
|
Heng Li
|
7ed26a4857
|
backup
|
2017-06-23 19:31:23 -04:00 |
|
Heng Li
|
d75b5b4e8a
|
backup; NOT working yet
|
2017-06-23 19:21:47 -04:00 |
|
Heng Li
|
4fea3d778a
|
backup
|
2017-06-23 18:57:00 -04:00 |
|
Heng Li
|
6c8368c24c
|
get the left-extension sequence correctly
|
2017-06-23 18:25:47 -04:00 |
|
Heng Li
|
990f7b0b71
|
backup
|
2017-06-23 15:13:53 -04:00 |
|
Heng Li
|
4ae0b46972
|
min_ksw_len
|
2017-06-23 14:38:28 -04:00 |
|
Heng Li
|
9cd313eae1
|
sequence retrieval working
|
2017-06-23 14:11:56 -04:00 |
|
Heng Li
|
326d91deb0
|
backup
|
2017-06-23 14:06:00 -04:00 |
|
Heng Li
|
44cdd18de0
|
start to work on alignment
|
2017-06-23 13:44:45 -04:00 |