e68d868806
use updated kalloc macros ( #1051 )
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* use updated kalloc macros
* review
* get the reference
* store the reference
* last one
2023-04-21 10:45:53 -04:00
226fd6114c
fixed a wrong comment. Resolves #997
2022-11-30 09:22:39 -05:00
c2f07ff2ac
r1149: implemented random open syncmer
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On the mm2-update dataset, -j8 leads to sparser k-mer selection at higher
accuracy. The speed becomes a little slower. There seems a benefit but not a
big one.
2022-10-21 19:07:28 -04:00
36942ff711
r1119: fixed a typo in the new chaining code
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Not affecting v2.23
2021-12-25 12:46:26 -05:00
fcaadc22b7
r1116: cut long chains at weak points
2021-11-20 19:07:44 -05:00
db37fc43a7
r1115: prepare for chain breaking
2021-11-20 13:42:44 -05:00
2546999639
dev-r1076: log gap penalty
2021-07-17 18:23:59 -04:00
459ce04c84
r1069: fixed a regression in comparison to v2.18
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for PE short reads. An interesting omission. Resolves #776
2021-07-02 11:45:21 -04:00
e74dfd1aa9
r1054: fixed a memory leak
2021-05-26 12:32:04 -04:00
e81927e7a1
prepare to backport unimap/minigraph chaining
2021-05-02 18:25:49 -04:00
Chris Seymour
Heng Li