Heng Li
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42baf287a4
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r866: fixed a typo; resolves #262
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2018-10-30 09:11:55 -04:00 |
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Heng Li
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7e6e8ca73f
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r792: fixed -Wextra warnings and resolved #184
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2018-06-19 15:26:58 -04:00 |
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Heng Li
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22290db3e4
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r546: minor mapQ tuning
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2017-11-01 13:20:39 -04:00 |
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Heng Li
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b8e758df0f
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r544: increased PE mapQ
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2017-10-31 16:55:02 -04:00 |
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Heng Li
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e6f525edaf
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r512: option to filter poorly aligned reads
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2017-10-16 10:38:22 -04:00 |
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Heng Li
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858213d513
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r511: fixed wrong primary sam record
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2017-10-12 23:02:18 -04:00 |
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Heng Li
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5ab99eb26e
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more accurate SAM flag
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2017-10-05 10:59:38 -04:00 |
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Heng Li
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19c39e704f
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r464: fixed a bug in pairing, due to randomization
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2017-10-04 13:37:40 -04:00 |
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Heng Li
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5babf41a38
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r462: SAM primary flag not properly set
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2017-10-04 13:11:29 -04:00 |
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Heng Li
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2a1e738a94
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r461: randomize repetitive hits
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2017-10-04 13:05:18 -04:00 |
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Heng Li
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935a6e6064
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r450: differentiate exact repeats via mapq
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2017-09-27 23:51:05 -04:00 |
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Heng Li
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8301222174
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r448: fixed a bug when computing PE quality
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2017-09-27 21:54:07 -04:00 |
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Heng Li
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9541052564
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r447: paired-end mapping quality
not as good as I would hope...
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2017-09-27 15:39:25 -04:00 |
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Heng Li
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7e0d70bfd3
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r445: pair coordinate adjustment working
Next: mapq adjustment, which will be tricky...
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2017-09-27 15:38:18 -04:00 |
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Heng Li
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a349d85280
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r444: changed the way orientation is specified
The old model doesn't work with RF or RR orientation. The new model only works
with paired-end reads. For >2 segments, only FF is supported.
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2017-09-27 12:33:10 -04:00 |
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Heng Li
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55d1e4f638
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r440: better chain filtering for PE reads
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2017-09-26 11:03:36 -04:00 |