Heng Li
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03dc8d5d97
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test if index is built for #413
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2019-06-07 09:11:11 -04:00 |
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Heng Li
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7bc87b4175
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Release minimap2-2.17 (r941)
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2019-05-04 23:49:17 -04:00 |
|
Heng Li
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189555503a
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potentially fix issue #372
Needs someone to confirm
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2019-04-30 21:49:51 -04:00 |
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Heng Li
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6b391e3373
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Release minimap2-2.16 (r922)
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2019-02-28 15:49:24 -05:00 |
|
Heng Li
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aaf3233818
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added mappy.Aligner.seq_names to return seq names
Resolves #312
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2019-01-29 12:53:20 -05:00 |
|
Heng Li
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c404f49569
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Release minimap2-2.15 (r905)
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2019-01-10 12:34:45 -05:00 |
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Heng Li
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59f23f7579
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Release minimap2-2.14 (r883)
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2018-11-06 00:03:16 -05:00 |
|
Heng Li
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5d5d392c02
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Release minimap2-2.13 (r850)
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2018-10-11 13:18:31 -04:00 |
|
Heng Li
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9a567e4b37
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allow mappy to change scoring
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2018-08-06 09:52:13 -04:00 |
|
Heng Li
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b0f39a1a61
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r823: mappy to index a single sequence
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2018-08-05 20:57:05 -04:00 |
|
Heng Li
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ff9917a1c4
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r819: mappy to support cs/MD
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2018-07-24 23:29:55 -04:00 |
|
Heng Li
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0517972d02
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Release minimap2-2.11 (r797)
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2018-06-21 00:04:08 -04:00 |
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Heng Li
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e9ca0c9dab
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added __version__; resolved #165
Not sure if this is the right way. Apparently working.
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2018-06-19 15:40:26 -04:00 |
mvdbeek
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1bde2cf076
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Allow setting max_frag_len on a per alignment level
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2018-06-19 14:39:30 -04:00 |
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mvdbeek
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31fc0f218a
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Allow setting max_frag_len parameter in Aligner class
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2018-06-19 14:39:30 -04:00 |
|
Heng Li
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24a4808826
|
r718: retrieve sequence from the index
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2018-02-23 10:18:26 -05:00 |
|
Heng Li
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29ed675ee5
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bugfix: in-place revcomp() not working
|
2018-02-20 11:05:54 -05:00 |
|
Heng Li
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7dc7097208
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added reverse complement
|
2018-02-20 09:41:25 -05:00 |
|
Heng Li
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090361c25b
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fixed a typo in mappy (#117)
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2018-02-16 21:10:57 -05:00 |
|
Heng Li
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46d6349af4
|
r670: added PE support to mappy
and minor code cleanup
|
2018-01-31 11:33:08 -05:00 |
cwright
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4f77b0c1ed
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Fix typo in strand property
|
2017-11-11 01:18:44 +00:00 |
martinghunt
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29a26e3eea
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Bug fix with byte strings in Python3
|
2017-11-09 13:57:15 +00:00 |
|
Heng Li
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b24c9c90c7
|
updated mappy and example.c
|
2017-10-16 11:15:07 -04:00 |
|
Heng Li
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cf93e5c0a1
|
more functional minimap2.py; added categories
|
2017-09-17 17:06:39 -04:00 |
|
Heng Li
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0b660c70e2
|
syntax error
|
2017-09-17 16:02:06 -04:00 |
|
Heng Li
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5715c423ff
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exposed timer and verbose-level to mappy
|
2017-09-17 15:21:36 -04:00 |
|
Heng Li
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c8a019fae8
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exposed fasta/q reader to mappy
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2017-09-17 14:41:59 -04:00 |
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Heng Li
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d5012a1b17
|
this is embarrassing: rename again to mappy
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2017-09-17 00:05:30 -04:00 |