minimap2

Commit Graph

Author	SHA1	Message	Date
Heng Li	f6608fe99c	r620: revamped thread-local memory management * Don't preallocate sdust_buf or minizer list. kalloc should be fast enough - benchmarks needed to confirm. * Fixed a memory leak caused by divergence estimate (post v2.5) * Reset the kalloc buffer after mapping a long query. This reduces peak memory when large chunks of memory are allocated, at the cost of performance, though.	2017-12-11 12:11:10 -05:00
Heng Li	11081c6c27	r411: refactored kalloc for clarity The new version is closer to K&R's original implementation.	2017-09-18 19:49:15 -04:00
Heng Li	01baa847a1	Homopolymer-compressed k-mer sketch	2017-04-06 15:37:34 -04:00

Author

SHA1

Message

Date

Heng Li

f6608fe99c

r620: revamped thread-local memory management

* Don't preallocate sdust_buf or minizer list. kalloc should be fast enough -
  benchmarks needed to confirm.

* Fixed a memory leak caused by divergence estimate (post v2.5)

* Reset the kalloc buffer after mapping a long query. This reduces peak memory
  when large chunks of memory are allocated, at the cost of performance, though.

2017-12-11 12:11:10 -05:00

Heng Li

11081c6c27

r411: refactored kalloc for clarity

The new version is closer to K&R's original implementation.

2017-09-18 19:49:15 -04:00

Heng Li

01baa847a1

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

3 Commits (57ec73ec6c0481a305dc1d2ad6f92f45864a7529)