Commit Graph

8 Commits (52fafe0fed69ee2f3ef62080c67b4e5926e35a77)

Author SHA1 Message Date
Heng Li 7fc03b0c32 r953: krealloc is buggy
Its use in minimap2 didn't trigger the bug, so the older minimap2 is still ok.
2019-07-18 09:13:30 -04:00
Heng Li f6608fe99c r620: revamped thread-local memory management
* Don't preallocate sdust_buf or minizer list. kalloc should be fast enough -
  benchmarks needed to confirm.

* Fixed a memory leak caused by divergence estimate (post v2.5)

* Reset the kalloc buffer after mapping a long query. This reduces peak memory
  when large chunks of memory are allocated, at the cost of performance, though.
2017-12-11 12:11:10 -05:00
Heng Li 11081c6c27 r411: refactored kalloc for clarity
The new version is closer to K&R's original implementation.
2017-09-18 19:49:15 -04:00
Heng Li 6db9b7579c Better MSVC support
* get rid of alloca()
* no variable-sized arrays
2017-09-03 11:05:55 -04:00
Heng Li 490a37a599 number of allocated units must be an even number 2017-06-26 23:15:30 -04:00
Heng Li 0d03a43efd don't round to power-of-2
Because rounding wastes memory when we use power-of-2 high-water marks.
2017-06-26 22:10:45 -04:00
Heng Li f35e152e99 fixed a few memory leaks 2017-04-13 23:05:19 -04:00
Heng Li 01baa847a1 Homopolymer-compressed k-mer sketch 2017-04-06 15:37:34 -04:00