Heng Li
|
9c5767f9ed
|
r477: renamed multi_seg to frag_mode
|
2017-10-05 15:48:17 -04:00 |
|
Heng Li
|
3bb66e1ed3
|
multi-seg working on toy examples
|
2017-09-25 13:42:04 -04:00 |
|
Heng Li
|
a742f10164
|
get multi-seg code ready; probably not working yet
|
2017-09-24 15:17:17 -04:00 |
|
Heng Li
|
f0951141a1
|
allow to read multiple files interleaved
|
2017-09-24 14:33:05 -04:00 |
|
Heng Li
|
5400191097
|
get batch sequence reader ready for paired-end
|
2017-09-22 09:56:31 -04:00 |
|
Heng Li
|
e9c57f6d8b
|
r402: exposed kseq (for API in mappy later)
|
2017-09-17 13:09:16 -04:00 |
|
Heng Li
|
0fe1a224ab
|
r309: improved SAM header output
|
2017-08-25 10:35:58 +08:00 |
|
Heng Li
|
71c988f6ab
|
r188: renamed bseq* to mm_bseq*
to avoid naming collisions between minimap2 and bwa/fermi-lite/etc
|
2017-07-19 09:26:46 -04:00 |
|
Heng Li
|
a9f089f0aa
|
r131: wrong EOF test; make mb_size <= batch_size
|
2017-07-01 09:26:09 -04:00 |
|
Heng Li
|
41efd03d7a
|
r129: fixed memory leak caused by qualities
|
2017-06-30 23:48:00 -04:00 |
|
Heng Li
|
fce87ce7bd
|
r121: output QUAL and unmapped to SAM
|
2017-06-30 14:40:54 -04:00 |
|
Heng Li
|
b3bc4911ba
|
index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
Heng Li
|
01baa847a1
|
Homopolymer-compressed k-mer sketch
|
2017-04-06 15:37:34 -04:00 |