Alberto Zeni
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a6fab118c5
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Fixed alignment result final update when computing the exact max value
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2023-04-06 21:05:24 -04:00 |
mbrcic
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66db9da7d8
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changed preprocessor conditionals for SIMDe
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2020-04-22 19:50:59 +02:00 |
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mbrcic
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f47e8a525e
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SIMDe made optional. Include paths changes for SIMDe.
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2020-04-21 01:08:32 +02:00 |
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mbrcic
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9e6fdd376b
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Changed sse2neon with SIMDe. Added building non-SIMD version.
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2020-04-20 18:28:06 +02:00 |
Heng Li
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7e6e8ca73f
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r792: fixed -Wextra warnings and resolved #184
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2018-06-19 15:26:58 -04:00 |
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Heng Li
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abe989e355
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the previous fix on int overflow is incomplete
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2018-05-11 10:12:57 -04:00 |
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Heng Li
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734ac379bb
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r770: matching N bases not working properly (#155)
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2018-04-30 19:55:23 -04:00 |
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Heng Li
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9364bc64d7
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r501: added end_bonus to extz2
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2017-10-11 09:39:41 -04:00 |
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Heng Li
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198849a716
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r491: an ambiguous base costs the same as gap ext
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2017-10-09 09:59:42 -04:00 |
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Heng Li
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46e8b6a4f9
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r338: portable CPU dispatch, which is the default
working with gcc, icc, clang and msvc.
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2017-09-03 20:29:24 -04:00 |
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Heng Li
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3c997ca016
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r337: support CPU dispatch for gcc-4.8+
using __builtin_cpu_supports()
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2017-09-03 14:29:49 -04:00 |
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Heng Li
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993a2bb521
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r301: separate introns from deletions
When an intron is adjacent to a deletion, the old code count both as introns,
which lead to an inaccurate exon boundary.
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2017-08-18 15:31:15 +08:00 |
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Heng Li
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4badf2fcbf
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avoid wasted memory allocation for backtrack
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2017-08-08 11:29:46 -04:00 |
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Heng Li
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5934d68772
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r229: a new way to prevent out-of-band backtrack
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2017-07-29 23:52:30 -04:00 |
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Heng Li
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470021fd27
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r189: sync with ksw2 (no effective changes)
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2017-07-19 09:28:25 -04:00 |
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Heng Li
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f42790398d
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fixed a band boundary bug in ksw2
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2017-07-16 17:52:57 -04:00 |
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Heng Li
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cc554aee43
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r159: use two-piece gap penalty
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2017-07-08 10:26:00 -04:00 |
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Heng Li
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d274e1b743
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backup
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2017-06-29 12:58:52 -04:00 |
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Heng Li
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c8d122bcdb
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backup
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2017-06-29 11:11:15 -04:00 |
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Heng Li
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5e202afb5f
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fixed invalid backtracking, a temporary solution
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2017-06-28 18:17:57 -04:00 |
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Heng Li
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8977f07269
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r88: fixed an out-of-boundary bug in ksw2
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2017-06-27 14:50:31 -04:00 |
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Heng Li
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42283ef10c
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r87: fixed a bug in ksw2
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2017-06-27 13:29:48 -04:00 |
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Heng Li
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c02ff4662c
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r85: two-round z-drop
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2017-06-27 10:36:24 -04:00 |
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Heng Li
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24d7f7f8b1
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disabled dynamic banding; buggy
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2017-06-25 22:43:15 -04:00 |
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Heng Li
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72dfb0c99e
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fixed a bug in ksw2
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2017-06-25 10:22:13 -04:00 |
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Heng Li
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4fea3d778a
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backup
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2017-06-23 18:57:00 -04:00 |
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Heng Li
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c6d5dea314
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replace with newer versions
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2017-06-22 12:30:45 -04:00 |