Heng Li
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d8d4d29b68
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Release minimap2-2.0rc1-r232
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2017-07-30 14:32:40 -04:00 |
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Heng Li
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1f78e1ee53
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r230: code formatting changes only
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2017-07-30 12:31:40 -04:00 |
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Heng Li
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19d6ec885e
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r224: inversion alignment around Z-drop break
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2017-07-29 13:09:10 -04:00 |
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Heng Li
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84922cfe41
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clarify that wrong seeding mainly occurs in LCRs
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2017-07-28 14:33:15 -04:00 |
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Heng Li
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667b32a516
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added algorithm overview
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2017-07-27 18:50:39 -04:00 |
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Heng Li
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4aff301ef4
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r190: default -k to 15; added -x map-ont
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2017-07-19 10:11:14 -04:00 |
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Heng Li
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9a935dcef5
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Fixed grammar errors
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2017-07-18 11:37:58 -04:00 |
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Heng Li
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495a78e40a
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Get documentation ready for release
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2017-07-18 11:04:09 -04:00 |
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Heng Li
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71e2a97a4c
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r180: changed -x asm5 settings
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2017-07-18 00:00:36 -04:00 |
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Heng Li
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941059292e
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r179: changed the preset for assembly alignment
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2017-07-17 22:41:46 -04:00 |
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Heng Li
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b4280d186f
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r176: removed seedcov_ratio; changed default opt
min_seedcov_ratio is not used
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2017-07-12 12:47:46 -04:00 |
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Heng Li
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eeeb2ffb68
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r174: make max-chain-skip work
The max-chain-skip heuristics did not work due to a bug. Without this
heuristics, chaining is too slow for long-read overlap.
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2017-07-12 10:08:06 -04:00 |
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Heng Li
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cfa083a98b
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r172: separated PacBio and ONT read overlapping
HPC k-mer works better for PacBio, but worse for ONT. Interesting...
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2017-07-11 15:12:35 -04:00 |
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Heng Li
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1fee5f8edc
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r160: -O and -E accept two numbers
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2017-07-08 11:34:52 -04:00 |
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Heng Li
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cc554aee43
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r159: use two-piece gap penalty
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2017-07-08 10:26:00 -04:00 |
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Heng Li
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9823317e8f
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r158: optionally ignore base quality
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2017-07-05 18:23:50 -04:00 |
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Heng Li
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a94bc31311
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r151: documentations
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2017-07-03 12:11:07 -04:00 |
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Heng Li
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51cfb60520
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r145: changed default -p from 2 to 0.8
For long reads, secondary alignments can be very information.
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2017-07-02 22:51:45 -04:00 |
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Heng Li
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da90b614db
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r141: replaced -b with -a (for SAM output)
-b sounds like BAM. I like -a better.
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2017-07-01 16:54:59 -04:00 |
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Heng Li
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67cad9dff3
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added limitations
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2017-07-01 12:11:56 -04:00 |
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Heng Li
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a92bd75b7b
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make the table fit 80 columns
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2017-07-01 11:54:07 -04:00 |
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Heng Li
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02145b2166
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explain option -d
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2017-07-01 11:48:37 -04:00 |
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Heng Li
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b2ce3f9ed0
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get rid of two more new lines
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2017-07-01 11:37:58 -04:00 |
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Heng Li
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5ebe868db5
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added two more new lines
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2017-07-01 11:32:49 -04:00 |
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Heng Li
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cb6c277c62
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removed unnecessary empty lines
On linux, these empty lines count.
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2017-07-01 11:31:32 -04:00 |
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Heng Li
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b883d132e2
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no effective change
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2017-07-01 11:26:23 -04:00 |
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Heng Li
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2338e887d9
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finished the first draft of manpage
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2017-07-01 11:25:54 -04:00 |
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Heng Li
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d4301736b8
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more manpage
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2017-07-01 00:23:46 -04:00 |
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Heng Li
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41efd03d7a
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r129: fixed memory leak caused by qualities
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2017-06-30 23:48:00 -04:00 |
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Heng Li
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10910b72d1
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backup
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2017-06-30 23:31:38 -04:00 |
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Heng Li
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d118cafd25
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added man page
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2017-06-30 23:30:17 -04:00 |