Heng Li
|
1a9fc04cf0
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backup
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2017-06-06 10:16:33 -04:00 |
|
Heng Li
|
acc7382a30
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backup
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2017-06-04 16:09:45 -04:00 |
|
Heng Li
|
949d9be872
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chaining with DP
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2017-05-09 22:20:57 +08:00 |
|
Heng Li
|
2827c29b48
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minor backup
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2017-05-04 23:22:11 +08:00 |
|
Heng Li
|
10db6b0434
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wrong HPC
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2017-05-04 17:45:19 +08:00 |
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Heng Li
|
06adabd0dc
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clean bill from valgrind
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2017-05-04 12:44:49 +08:00 |
|
Heng Li
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7b53f7aa84
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chaining
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2017-05-03 20:47:29 +08:00 |
|
Heng Li
|
f2ae8eb670
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mostly debugging code
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2017-05-01 16:50:09 +08:00 |
|
Heng Li
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2c9f1bce3e
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k-mer thinning apparently working
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2017-04-28 18:24:45 +08:00 |
|
Heng Li
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7b7fabef4d
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added idx_stat
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2017-04-26 22:52:28 +08:00 |
|
Heng Li
|
de367a340c
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compilable again
|
2017-04-26 19:36:46 +08:00 |
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Heng Li
|
56723ad580
|
moved `sum_len` out of the index
as it can be inferred.
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2017-04-19 11:06:24 -04:00 |
|
Heng Li
|
f35e152e99
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fixed a few memory leaks
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2017-04-13 23:05:19 -04:00 |
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Heng Li
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9947c953cf
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sort positions in each bucket
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2017-04-12 13:31:12 -04:00 |
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Heng Li
|
1bf3ae6752
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backup
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2017-04-09 15:09:39 -04:00 |
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Heng Li
|
79c9478f46
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backup
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2017-04-09 14:59:39 -04:00 |
|
Heng Li
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49b8d23695
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indexing not segfault
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2017-04-09 14:17:37 -04:00 |
|
Heng Li
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8c230563cc
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can be compiled
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2017-04-07 15:56:10 -04:00 |
|
Heng Li
|
17b57a9af0
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forgot to link misc.o
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2017-04-07 15:43:55 -04:00 |
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Heng Li
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f5cdd3f72f
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is_hpc is a property of the index
|
2017-04-07 15:42:33 -04:00 |
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Heng Li
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b3bc4911ba
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index can be compiled; not tested yet
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2017-04-07 15:30:30 -04:00 |
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Heng Li
|
0f160151c7
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make sdust work (it didn't)
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2017-04-07 10:45:50 -04:00 |
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Heng Li
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bacb7534d2
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make sdust working with kalloc
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2017-04-06 15:51:36 -04:00 |
|
Heng Li
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01baa847a1
|
Homopolymer-compressed k-mer sketch
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2017-04-06 15:37:34 -04:00 |
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Heng Li
|
2bb0839177
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The original sketch.c from minimap
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2017-04-05 15:39:55 -04:00 |