Heng Li
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6a4b9f9082
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r974: more informative msg on wrong FASTQ records
Resolves #510
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2020-01-21 10:56:59 -05:00 |
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Heng Li
|
d2e14705e7
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r968: allow large mini_batch; resolves #491
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2020-01-18 12:24:44 -05:00 |
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Heng Li
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91f548b497
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r886: fixed two minor typos
Resolves #264
Resolves #265
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2018-11-08 12:04:14 -05:00 |
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Heng Li
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3db5bfe6e5
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r880: fixed false wrong FASTA/Q alert
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2018-11-05 20:52:07 -05:00 |
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Heng Li
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fd64dd26f6
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r875: warn given incorrect FASTA/Q
resolves #252
resolves #255
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2018-11-05 10:02:44 -05:00 |
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Heng Li
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a8ee48c2ce
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r873: comforming to C99/C11; resolves #261
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2018-11-05 08:25:07 -05:00 |
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Heng Li
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7e6e8ca73f
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r792: fixed -Wextra warnings and resolved #184
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2018-06-19 15:26:58 -04:00 |
|
Heng Li
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08bd2123b6
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r752: option to copy comments to output (#136)
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2018-03-23 10:04:33 -04:00 |
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Heng Li
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b328795051
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r706: don't segfault upon wrong FASTA/Q (#111)
The lack of robustness cost me several hours to identify.
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2018-02-13 10:00:22 -05:00 |
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Heng Li
|
43bfa6199d
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r667: warn if one query file has fewer records #92
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2018-01-28 17:36:21 -05:00 |
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Heng Li
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543fa12e68
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r659: for C++ compatibility
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2018-01-19 10:40:18 -05:00 |
|
Heng Li
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bf2d4f7aec
|
r486: treat "U" as "T" for RNA reads (#33)
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2017-10-07 18:53:25 -04:00 |
|
Heng Li
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9c5767f9ed
|
r477: renamed multi_seg to frag_mode
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2017-10-05 15:48:17 -04:00 |
|
Heng Li
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3bb66e1ed3
|
multi-seg working on toy examples
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2017-09-25 13:42:04 -04:00 |
|
Heng Li
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a742f10164
|
get multi-seg code ready; probably not working yet
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2017-09-24 15:17:17 -04:00 |
|
Heng Li
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f0951141a1
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allow to read multiple files interleaved
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2017-09-24 14:33:05 -04:00 |
|
Heng Li
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5400191097
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get batch sequence reader ready for paired-end
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2017-09-22 09:56:31 -04:00 |
|
Heng Li
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e9c57f6d8b
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r402: exposed kseq (for API in mappy later)
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2017-09-17 13:09:16 -04:00 |
|
Heng Li
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0fe1a224ab
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r309: improved SAM header output
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2017-08-25 10:35:58 +08:00 |
|
Heng Li
|
71c988f6ab
|
r188: renamed bseq* to mm_bseq*
to avoid naming collisions between minimap2 and bwa/fermi-lite/etc
|
2017-07-19 09:26:46 -04:00 |
|
Heng Li
|
a9f089f0aa
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r131: wrong EOF test; make mb_size <= batch_size
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2017-07-01 09:26:09 -04:00 |
|
Heng Li
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41efd03d7a
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r129: fixed memory leak caused by qualities
|
2017-06-30 23:48:00 -04:00 |
|
Heng Li
|
fce87ce7bd
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r121: output QUAL and unmapped to SAM
|
2017-06-30 14:40:54 -04:00 |
|
Heng Li
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b3bc4911ba
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index can be compiled; not tested yet
|
2017-04-07 15:30:30 -04:00 |
|
Heng Li
|
01baa847a1
|
Homopolymer-compressed k-mer sketch
|
2017-04-06 15:37:34 -04:00 |