minimap2

Author	SHA1	Message	Date
Heng Li	7fc03b0c32	r953: krealloc is buggy Its use in minimap2 didn't trigger the bug, so the older minimap2 is still ok.	2019-07-18 09:13:30 -04:00
Heng Li	f6608fe99c	r620: revamped thread-local memory management * Don't preallocate sdust_buf or minizer list. kalloc should be fast enough - benchmarks needed to confirm. * Fixed a memory leak caused by divergence estimate (post v2.5) * Reset the kalloc buffer after mapping a long query. This reduces peak memory when large chunks of memory are allocated, at the cost of performance, though.	2017-12-11 12:11:10 -05:00
Heng Li	11081c6c27	r411: refactored kalloc for clarity The new version is closer to K&R's original implementation.	2017-09-18 19:49:15 -04:00
Heng Li	01baa847a1	Homopolymer-compressed k-mer sketch	2017-04-06 15:37:34 -04:00