Heng Li
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240f6caaff
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backup manuscript
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2017-08-24 22:05:14 +08:00 |
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Heng Li
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ce859dbe1c
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evaluate introns
this simplies the metrics
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2017-08-20 21:54:59 +08:00 |
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Heng Li
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a4c41f64a5
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the final version
to be replaced by intron-eval
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2017-08-20 21:54:35 +08:00 |
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Heng Li
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5ed2faf270
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minor tuning to the matching rules
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2017-08-19 16:21:49 +08:00 |
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Heng Li
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2d11aaa830
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option to print all exons for debugging
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2017-08-12 10:04:16 -04:00 |
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Heng Li
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30b8cb4672
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option to print correct exons
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2017-08-11 17:50:21 -04:00 |
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Heng Li
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0c1760bc86
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bugfix; print errors; better rules
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2017-08-11 16:28:52 -04:00 |
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Heng Li
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a99358bc3d
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r282: reduced intron cost; added eval script
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2017-08-11 00:06:01 -04:00 |
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Heng Li
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5b10667967
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sim-eval.js to support mason2 read names and SAM
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2017-08-07 13:28:33 -04:00 |
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Heng Li
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bd1541dce1
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renamed simulation-related scripts
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2017-08-07 13:26:25 -04:00 |
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Heng Li
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1597f2b030
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convert mason2 SAM to fastq
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2017-08-07 12:45:34 -04:00 |
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Heng Li
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3217178d4a
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fixed k8 download page
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2017-08-04 14:53:00 -04:00 |
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Heng Li
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b40598fa91
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added paf2aln.js example
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2017-08-04 14:51:33 -04:00 |
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Heng Li
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269b8661b9
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minor clarification
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2017-08-04 14:49:25 -04:00 |
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Heng Li
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890d7bbd5b
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added README for misc scripts
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2017-08-04 14:46:31 -04:00 |
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Heng Li
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1aca0d5098
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copied sam2paf.js here for completeness
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2017-08-04 14:44:37 -04:00 |
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Heng Li
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68d99f0edb
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Merge branch 'cs-tag' into dev
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2017-08-04 14:31:46 -04:00 |
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Heng Li
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fd66ab5413
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blast-like output working
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2017-08-04 14:31:21 -04:00 |
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Heng Li
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71f82759af
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convert paf to maf
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2017-08-04 13:05:46 -04:00 |
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Heng Li
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8b1e36c609
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minor tweaks to the evaluation script
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2017-08-01 13:52:29 -04:00 |
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Heng Li
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ebbe9c1eb8
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r219: fixed a bug caused by skipping tandem seeds
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2017-07-28 14:06:56 -04:00 |
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Heng Li
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8b08a2ec41
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added first-only and all-primary modes to eval
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2017-07-26 19:32:26 -04:00 |
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Heng Li
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9f728dd96a
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tunable overlap ratio
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2017-07-26 18:30:29 -04:00 |
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Heng Li
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323293fbda
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changed the way mapq is counted
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2017-07-26 14:20:31 -04:00 |
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Heng Li
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bd33bed455
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make output better
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2017-07-26 12:03:42 -04:00 |
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Heng Li
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a8ad53ee81
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evaluating read mapping for pbsim2fa reads
More functionality to be added later
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2017-07-26 11:17:34 -04:00 |
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Heng Li
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4bd7ebc39c
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convert pbsim .maf to fasta
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2017-07-25 13:54:58 -04:00 |
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Heng Li
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34ed85d46a
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optionally print the postions of long indels
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2017-07-08 20:16:25 -04:00 |
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Heng Li
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2f11a63b22
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script to collect alignment stats
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2017-07-08 20:01:36 -04:00 |