zzh
/
minimap2
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Release minimap2-2.24 (r1122)

This commit is contained in:
Heng Li 2021-12-26 15:14:54 -05:00
parent e25aa5ee74
commit fe35e679e9
8 changed files with 23 additions and 9 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

14
NEWS.md
View File

@ -1,3 +1,17 @@
Release 2.24-r1122 (26 December 2021)
-------------------------------------
This release improves alignment around long poorly aligned regions. Older
minimap2 may chain through such regions in rare cases which may result in
missing alignments later. The issue has become worse since the the change of
the chaining algorithm in v2.19. v2.23 implements an incomplete remedy. This
release provides a better solution with a X-drop-like heuristic and by enabling
two-bandwidth chaining in the assembly mode.
(2.24: 26 December 2021, r1122)
Release 2.23-r1111 (18 November 2021)
-------------------------------------

4
README.md
View File

@ -74,8 +74,8 @@ Detailed evaluations are available from the [minimap2 paper][doi] or the
Minimap2 is optimized for x86-64 CPUs. You can acquire precompiled binaries from
the [release page][release] with:
```sh
curl -L https://github.com/lh3/minimap2/releases/download/v2.23/minimap2-2.23_x64-linux.tar.bz2 | tar -jxvf -
./minimap2-2.23_x64-linux/minimap2
curl -L https://github.com/lh3/minimap2/releases/download/v2.24/minimap2-2.24_x64-linux.tar.bz2 | tar -jxvf -
./minimap2-2.24_x64-linux/minimap2
```
If you want to compile from the source, you need to have a C compiler, GNU make
and zlib development files installed. Then type `make` in the source code

4
cookbook.md
View File

@ -31,8 +31,8 @@ To acquire the data used in this cookbook and to install minimap2 and paftools,
please follow the command lines below:
```sh
# install minimap2 executables
curl -L https://github.com/lh3/minimap2/releases/download/v2.23/minimap2-2.23_x64-linux.tar.bz2 | tar jxf -
cp minimap2-2.23_x64-linux/{minimap2,k8,paftools.js} . # copy executables
curl -L https://github.com/lh3/minimap2/releases/download/v2.24/minimap2-2.24_x64-linux.tar.bz2 | tar jxf -
cp minimap2-2.24_x64-linux/{minimap2,k8,paftools.js} . # copy executables
export PATH="$PATH:"`pwd` # put the current directory on PATH
# download example datasets
curl -L https://github.com/lh3/minimap2/releases/download/v2.10/cookbook-data.tgz | tar zxf -

2
main.c
View File

@ -7,7 +7,7 @@
#include "mmpriv.h"
#include "ketopt.h"
#define MM_VERSION "2.23-r1119-dirty"
#define MM_VERSION "2.24-r1122"
#ifdef __linux__
#include <sys/resource.h>

2
minimap2.1
View File

@ -1,4 +1,4 @@
.TH minimap2 1 "18 December 2021" "minimap2-2.24 (r1121)" "Bioinformatics tools"
.TH minimap2 1 "18 December 2021" "minimap2-2.24 (r1122)" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences

2
misc/paftools.js
View File

@ -1,6 +1,6 @@
#!/usr/bin/env k8
var paftools_version = '2.23-r1111';
var paftools_version = '2.24-r1122';
/*****************************
***** Library functions *****

2
python/mappy.pyx
View File

@ -3,7 +3,7 @@ from libc.stdlib cimport free
cimport cmappy
import sys
__version__ = '2.23'
__version__ = '2.24'
cmappy.mm_reset_timer()

2
setup.py
View File

@ -23,7 +23,7 @@ def readme():
setup(
name = 'mappy',
version = '2.23',
version = '2.24',
url = 'https://github.com/lh3/minimap2',
description = 'Minimap2 python binding',
long_description = readme(),