diff --git a/map.c b/map.c index 0864c09..d72dafd 100644 --- a/map.c +++ b/map.c @@ -505,10 +505,6 @@ static void *worker_pipeline(void *shared, int step, void *in) mm_err_puts(p->str.s); } } - if (s->n_reg[i] == 0 && (p->opt->flag & MM_F_OUT_SAM)) { // write an unmapped record - mm_write_sam2(&p->str, mi, t, i - seg_st, -1, s->n_seg[k], &s->n_reg[seg_st], (const mm_reg1_t*const*)&s->reg[seg_st], km, p->opt->flag); - mm_err_puts(p->str.s); - } } for (i = seg_st; i < seg_en; ++i) { for (j = 0; j < s->n_reg[i]; ++j) free(s->reg[i][j].p);