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bugfix: unmapped records are duplicated in output

This commit is contained in:
Heng Li 2018-07-14 22:54:05 -04:00
parent 5cfa621b2d
commit f3417da838
1 changed files with 0 additions and 4 deletions
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4
map.c
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@ -505,10 +505,6 @@ static void *worker_pipeline(void *shared, int step, void *in)
mm_err_puts(p->str.s);
}
}
if (s->n_reg[i] == 0 && (p->opt->flag & MM_F_OUT_SAM)) { // write an unmapped record
mm_write_sam2(&p->str, mi, t, i - seg_st, -1, s->n_seg[k], &s->n_reg[seg_st], (const mm_reg1_t*const*)&s->reg[seg_st], km, p->opt->flag);
mm_err_puts(p->str.s);
}
}
for (i = seg_st; i < seg_en; ++i) {
for (j = 0; j < s->n_reg[i]; ++j) free(s->reg[i][j].p);