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Merge branch 'master' into sr

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Heng Li 2017-09-20 23:56:06 -04:00
parent 997011458c 1c948e0d1d
commit ef84e8b4e7
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tex/minimap2.tex
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@ -470,16 +470,16 @@ able to improve their accuracy further.
%{\footnotesize %{\footnotesize
%\begin{tabular}{lrrrr} %\begin{tabular}{lrrrr}
%\toprule %\toprule
%& GMAP & minimap2 & SpAln & STAR\\ % & GMAP & minimap2 & SpAln & STAR \\ % one GMAP thread took 14 days to align a tiny fraction of reads
%\midrule %\midrule
%Run time (CPU min) & & 243 & 2\,352 & 1\,647 \\ %Run time (CPU min) & - & 243 & 2,352 & 1,647 \\
%\# aligned reads & & 1\,123\,025 & 1\,094\,092 & 682\,452\\ %\# aligned reads & 1,113,502 & 1,123,025 & 1,094,092 & 682,452 \\
%\# chimeric alignments & & 33\,091 & 0 & 0\\ %\# chimeric alignments & 48,927 & 33,091 & 0 & 0 \\
%\# non-spliced alignments & & 339\,081 & 291\,447 & 272\,536\vspace{1em}\\ %\# non-spliced alignments & 334,097 & 339,081 & 291,447 & 272,536 \vspace{1em}\\
%\# aligned introns & & 9\,071\,755 & 9\,208\,564 & 3\,029\,121 \\ %\# aligned introns & 8,922,221 & 9,071,755 & 9,208,564 & 3,029,121 \\
%\# novel introns & & 42\,773 & 82\,230 & 17\,791 \\ %\# novel introns & 48,927 & 42,773 & 82,230 & 17,791 \\
%\% exact introns & & 94.9\% & 91.7\% & 84.7\% \\ %\% exact introns & 90.6\% & 94.9\% & 91.7\% & 84.7\% \\
%\% approx. introns&& 96.9\% & 93.4\% & 93.8\% \\ %\% approx. introns & 94.0\% & 96.9\% & 93.4\% & 93.8\% \\
%\botrule %\botrule
%\end{tabular} %\end{tabular}
%}{} %}{}