From eecc06086f068695b9472a75edfba8f1907b3f5e Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Tue, 9 Jan 2018 13:16:00 -0500
Subject: [PATCH] Released minimap2-2.7 (r654)

---
 NEWS.md    | 25 +++++++++++++++++++++++++
 README.md  |  4 ++--
 main.c     |  2 +-
 minimap2.1 |  2 +-
 setup.py   |  2 +-
 5 files changed, 30 insertions(+), 5 deletions(-)

diff --git a/NEWS.md b/NEWS.md
index 1de8d1c..21afd1e 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,28 @@
+Release 2.7-r654 (9 January 2018)
+---------------------------------
+
+This release fixed a bug in the splice mode and added a few minor features:
+
+ * Fixed a bug that occasionally takes an intron as a long deletion in the
+   splice mode. This was caused by wrong backtracking at the last CIGAR
+   operator. The current fix eliminates the error, but it is not optimal in
+   that it often produces a wrong junction when the last operator is an intron.
+   A future version of minimap2 may improve upon this.
+
+ * Support high-end ARM CPUs that implement the NEON instruction set (#81).
+   This enables minimap2 to work on Raspberry Pi 3 and Odroid XU4.
+
+ * Added a C API to construct a minimizer index from a set of C strings (#80).
+
+ * Check scoring specified on the command line (#79). Due to the 8-bit limit,
+   excessively large score penalties fail minimap2.
+
+For genomic sequences, minimap2 should give identical alignments to v2.6.
+
+(2.7: 9 January 2018, r654)
+
+
+
 Release 2.6-r623 (12 December 2017)
 -----------------------------------
 
diff --git a/README.md b/README.md
index 9817cf7..d6d301f 100644
--- a/README.md
+++ b/README.md
@@ -68,9 +68,9 @@ Detailed evaluations are available from the [minimap2 preprint][preprint].
 Minimap2 is optimized for x86-64 CPUs. You can acquire precompiled binaries from
 the [release page][release] with:
 ```sh
-curl -L https://github.com/lh3/minimap2/releases/download/v2.6/minimap2-2.6_x64-linux.tar.bz2 \
+curl -L https://github.com/lh3/minimap2/releases/download/v2.7/minimap2-2.7_x64-linux.tar.bz2 \
   | tar -jxvf -
-./minimap2-2.6_x64-linux/minimap2
+./minimap2-2.7_x64-linux/minimap2
 ```
 If you want to compile from the source, you need to have a C compiler, GNU make
 and zlib development files installed. Then type `make` in the source code
diff --git a/main.c b/main.c
index ed488e9..6c02a4d 100644
--- a/main.c
+++ b/main.c
@@ -6,7 +6,7 @@
 #include "mmpriv.h"
 #include "getopt.h"
 
-#define MM_VERSION "2.6-r653-dirty"
+#define MM_VERSION "2.7-r654"
 
 #ifdef __linux__
 #include <sys/resource.h>
diff --git a/minimap2.1 b/minimap2.1
index 49d1de5..bac22e8 100644
--- a/minimap2.1
+++ b/minimap2.1
@@ -1,4 +1,4 @@
-.TH minimap2 1 "12 December 2017" "minimap2-2.6 (r623)" "Bioinformatics tools"
+.TH minimap2 1 "9 January 2018" "minimap2-2.7 (r654)" "Bioinformatics tools"
 .SH NAME
 .PP
 minimap2 - mapping and alignment between collections of DNA sequences
diff --git a/setup.py b/setup.py
index d484d0d..13365e7 100644
--- a/setup.py
+++ b/setup.py
@@ -23,7 +23,7 @@ def readme():
 
 setup(
 	name = 'mappy',
-	version = '2.6',
+	version = '2.7',
 	url = 'https://github.com/lh3/minimap2',
 	description = 'Minimap2 python binding',
 	long_description = readme(),