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Document --no-pairing (#256)

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Heng Li 2018-10-23 10:00:21 -04:00
parent 377c7099a8
commit ecb6c5c36c
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@ -274,6 +274,10 @@ Only map to the reverse complement strand of the reference sequences.
.BR --heap-sort = no | yes
If yes, sort anchors with heap merge, instead of radix sort. Heap merge is
faster for short reads, but slower for long reads. [no]
.TP
.B --no-pairing
Treat two reads in a pair as independent reads. The mate related fields in SAM
are still properly populated.
.SS Alignment options
.TP 10
.BI -A \ INT