From e026e1843960ec857614d43e4ec1a444187be6ce Mon Sep 17 00:00:00 2001 From: Heng Li Date: Mon, 1 Jul 2019 09:18:33 -0400 Subject: [PATCH] added the description of "SA" tag. Closes #438 --- minimap2.1 | 1 + 1 file changed, 1 insertion(+) diff --git a/minimap2.1 b/minimap2.1 index 21b84bd..ff0b922 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -638,6 +638,7 @@ s2 i Chaining score of the best secondary chain NM i Total number of mismatches and gaps in the alignment MD Z To generate the ref sequence in the alignment AS i DP alignment score +SA Z List of other supplementary alignments ms i DP score of the max scoring segment in the alignment nn i Number of ambiguous bases in the alignment ts A Transcript strand (splice mode only)