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r653: the last change may write "N" wrongly

This commit is contained in:
Heng Li 2018-01-08 11:33:53 -05:00
parent 1842d7f5b5
commit dfea113f28
2 changed files with 2 additions and 2 deletions
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2
ksw2.h
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@ -142,7 +142,7 @@ static inline void ksw_backtrack(void *km, int is_rot, int is_rev, int min_intro
else if (state == 3 && min_intron_len > 0) cigar = ksw_push_cigar(km, &n_cigar, &m_cigar, cigar, 3, 1), --i; // intron
else cigar = ksw_push_cigar(km, &n_cigar, &m_cigar, cigar, 1, 1), --j; // insertion
}
if (i >= 0) cigar = ksw_push_cigar(km, &n_cigar, &m_cigar, cigar, i >= min_intron_len? 3 : 2, i + 1); // first deletion
if (i >= 0) cigar = ksw_push_cigar(km, &n_cigar, &m_cigar, cigar, min_intron_len > 0 && i >= min_intron_len? 3 : 2, i + 1); // first deletion
if (j >= 0) cigar = ksw_push_cigar(km, &n_cigar, &m_cigar, cigar, 1, j + 1); // first insertion
if (!is_rev)
for (i = 0; i < n_cigar>>1; ++i) // reverse CIGAR

2
main.c
View File

@ -6,7 +6,7 @@
#include "mmpriv.h"
#include "getopt.h"
#define MM_VERSION "2.6-r651-dirty"
#define MM_VERSION "2.6-r653-dirty"
#ifdef __linux__
#include <sys/resource.h>