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updated the mappy

This commit is contained in:
Heng Li 2017-10-05 17:10:07 -04:00
parent e0baf1ad54
commit de2fcc1bf3
1 changed files with 3 additions and 0 deletions
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python/cmappy.pxd
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@ -10,6 +10,7 @@ cdef extern from "minimap.h":
uint64_t batch_size uint64_t batch_size
ctypedef struct mm_mapopt_t: ctypedef struct mm_mapopt_t:
int seed
int sdust_thres int sdust_thres
int flag int flag
int bw int bw
@ -27,8 +28,10 @@ cdef extern from "minimap.h":
int zdrop int zdrop
int min_dp_max int min_dp_max
int min_ksw_len int min_ksw_len
int pe_ori, pe_bonus
float mid_occ_frac float mid_occ_frac
int32_t mid_occ int32_t mid_occ
int32_t max_occ
int mini_batch_size int mini_batch_size
int mm_set_opt(char *preset, mm_idxopt_t *io, mm_mapopt_t *mo) int mm_set_opt(char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)