From de2fcc1bf310c1af0361d6f006b243348197cc5b Mon Sep 17 00:00:00 2001 From: Heng Li Date: Thu, 5 Oct 2017 17:10:07 -0400 Subject: [PATCH] updated the mappy --- python/cmappy.pxd | 3 +++ 1 file changed, 3 insertions(+) diff --git a/python/cmappy.pxd b/python/cmappy.pxd index 5e797ef..60a8367 100644 --- a/python/cmappy.pxd +++ b/python/cmappy.pxd @@ -10,6 +10,7 @@ cdef extern from "minimap.h": uint64_t batch_size ctypedef struct mm_mapopt_t: + int seed int sdust_thres int flag int bw @@ -27,8 +28,10 @@ cdef extern from "minimap.h": int zdrop int min_dp_max int min_ksw_len + int pe_ori, pe_bonus float mid_occ_frac int32_t mid_occ + int32_t max_occ int mini_batch_size int mm_set_opt(char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)