diff --git a/minimap2.1 b/minimap2.1 index 4d40c59..8a759db 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -588,7 +588,7 @@ Up to 20% sequence divergence. .B splice Long-read spliced alignment .RB ( -k15 -.B -w5 --splice -g2k -G200k -A1 -B2 -O2,32 -E1,0 -b0 -C9 -z200 -ub --junc-bonus=9 --cap-sw-mem=0 +.B -w5 --splice -g2k -G200k -A1 -B2 -O2,32 -E1,0 -C9 -z200 -ub --junc-bonus=9 --cap-sw-mem=0 .BR --splice-flank=yes ). In the splice mode, 1) long deletions are taken as introns and represented as the