From cec23131e461465b3481429aee36766dd95adbf3 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 26 May 2021 21:20:48 -0400 Subject: [PATCH] fixed a python compilation error Caused by chain.c -> lchain.c --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 7551fe9..7eed99b 100644 --- a/setup.py +++ b/setup.py @@ -33,7 +33,7 @@ setup( keywords = 'sequence-alignment', scripts = ['python/minimap2.py'], ext_modules = [Extension('mappy', - sources = ['python/mappy.pyx', 'align.c', 'bseq.c', 'chain.c', 'format.c', 'hit.c', 'index.c', 'pe.c', 'options.c', + sources = ['python/mappy.pyx', 'align.c', 'bseq.c', 'lchain.c', 'format.c', 'hit.c', 'index.c', 'pe.c', 'options.c', 'ksw2_extd2_sse.c', 'ksw2_exts2_sse.c', 'ksw2_extz2_sse.c', 'ksw2_ll_sse.c', 'kalloc.c', 'kthread.c', 'map.c', 'misc.c', 'sdust.c', 'sketch.c', 'esterr.c', 'splitidx.c'], depends = ['minimap.h', 'bseq.h', 'kalloc.h', 'kdq.h', 'khash.h', 'kseq.h', 'ksort.h',