From cd105b47f2ffea91a9bfe407affcaee97eaaf004 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Mon, 31 Jul 2017 14:49:39 -0400
Subject: [PATCH] r237: fixed a bug in outputting cs:Z

---
 format.c | 1 +
 main.c   | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/format.c b/format.c
index ac25106..a84c735 100644
--- a/format.c
+++ b/format.c
@@ -85,6 +85,7 @@ static void write_cs(void *km, kstring_t *s, const mm_idx_t *mi, const mm_bseq1_
 					if (l_tmp > 0) {
 						tmp[l_tmp] = 0;
 						mm_sprintf_lite(s, "=%s", tmp);
+						l_tmp = 0;
 					}
 					mm_sprintf_lite(s, "*%c%c", "acgtn"[tseq[t_off + j]], "acgtn"[qseq[q_off + j]]);
 				} else tmp[l_tmp++] = "ACGTN"[qseq[q_off + j]];
diff --git a/main.c b/main.c
index 3a62613..f40c00a 100644
--- a/main.c
+++ b/main.c
@@ -8,7 +8,7 @@
 #include "minimap.h"
 #include "mmpriv.h"
 
-#define MM_VERSION "2.0rc1-r236-dirty"
+#define MM_VERSION "2.0rc1-r237-dirty"
 
 void liftrlimit()
 {