zzh
/
minimap2
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

make it explicit that -x is preferred for prebuilt

This commit is contained in:
Heng Li 2019-02-27 12:43:33 -05:00
parent ea84fc0a53
commit ccf1680aaf
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
README.md
View File

@ -9,8 +9,8 @@ cd minimap2 && make
# long sequences against a reference genome # long sequences against a reference genome
./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam
# create an index first and then map # create an index first and then map
./minimap2 -d MT-human.mmi test/MT-human.fa ./minimap2 -x map-ont -d MT-human-ont.mmi test/MT-human.fa
./minimap2 -a MT-human.mmi test/MT-orang.fa > test.sam ./minimap2 -a MT-human-ont.mmi test/MT-orang.fa > test.sam
# use presets (no test data) # use presets (no test data)
./minimap2 -ax map-pb ref.fa pacbio.fq.gz > aln.sam # PacBio genomic reads ./minimap2 -ax map-pb ref.fa pacbio.fq.gz > aln.sam # PacBio genomic reads
./minimap2 -ax map-ont ref.fa ont.fq.gz > aln.sam # Oxford Nanopore genomic reads ./minimap2 -ax map-ont ref.fa ont.fq.gz > aln.sam # Oxford Nanopore genomic reads