From ccf1680aaf927efa9baa37fb0f5176212484b87b Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 27 Feb 2019 12:43:33 -0500 Subject: [PATCH] make it explicit that -x is preferred for prebuilt --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 8430951..5857cdf 100644 --- a/README.md +++ b/README.md @@ -9,8 +9,8 @@ cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map -./minimap2 -d MT-human.mmi test/MT-human.fa -./minimap2 -a MT-human.mmi test/MT-orang.fa > test.sam +./minimap2 -x map-ont -d MT-human-ont.mmi test/MT-human.fa +./minimap2 -a MT-human-ont.mmi test/MT-orang.fa > test.sam # use presets (no test data) ./minimap2 -ax map-pb ref.fa pacbio.fq.gz > aln.sam # PacBio genomic reads ./minimap2 -ax map-ont ref.fa ont.fq.gz > aln.sam # Oxford Nanopore genomic reads