diff --git a/README.md b/README.md index 8430951..5857cdf 100644 --- a/README.md +++ b/README.md @@ -9,8 +9,8 @@ cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map -./minimap2 -d MT-human.mmi test/MT-human.fa -./minimap2 -a MT-human.mmi test/MT-orang.fa > test.sam +./minimap2 -x map-ont -d MT-human-ont.mmi test/MT-human.fa +./minimap2 -a MT-human-ont.mmi test/MT-orang.fa > test.sam # use presets (no test data) ./minimap2 -ax map-pb ref.fa pacbio.fq.gz > aln.sam # PacBio genomic reads ./minimap2 -ax map-ont ref.fa ont.fq.gz > aln.sam # Oxford Nanopore genomic reads