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fixed typos

This commit is contained in:
Heng Li 2021-08-08 11:18:02 -04:00
parent bb3048b2a0
commit cc14d1afdf
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tex/mm2-update.tex
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@ -194,7 +194,7 @@ the results by~\citep{Jain2020.11.01.363887}. Minimap2 v2.22 is as good as
Winnowmap2 now. Note that we were setting the Sniffles mapping quality Winnowmap2 now. Note that we were setting the Sniffles mapping quality
threshold to 10 in consistent with the benchmarks above. If we used the threshold to 10 in consistent with the benchmarks above. If we used the
default threshold 20, v2.22 would miss additional five SVs (accounting for default threshold 20, v2.22 would miss additional five SVs (accounting for
0.5\% of simulated SVs). For four out of these missing five SVs, minimap2 v2.22 0.5\% of simulated SVs). For four out of these five missing SVs, minimap2 v2.22
mapped more variant reads than Winnowmap2. Sniffles did not call these SVs mapped more variant reads than Winnowmap2. Sniffles did not call these SVs
because minimap2 tended to give them conservative mapping quality. It is worth because minimap2 tended to give them conservative mapping quality. It is worth
noting that the simulation here only considers a simple scenario in evolution. noting that the simulation here only considers a simple scenario in evolution.
@ -212,7 +212,7 @@ so did not report the numbers.
Minimap2 spends most computing time on base alignment. As recent improvements Minimap2 spends most computing time on base alignment. As recent improvements
in v2.22 incur little additional computing and do not change the base alignment in v2.22 incur little additional computing and do not change the base alignment
algorithm, the new version has similar performance to older verions. It is algorithm, the new version has similar performance to older versions. It is
consistently faster than Winnowmap2 by several times. Sometimes simple consistently faster than Winnowmap2 by several times. Sometimes simple
heuristics can be as effective as more sophisticated yet slower solutions. heuristics can be as effective as more sophisticated yet slower solutions.