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Merge remote-tracking branch 'origin/master'

This commit is contained in:
Heng Li 2018-04-10 09:12:26 -04:00
parent 372c90ceb5 2e2e69107c
commit cbeb86dad6
1 changed files with 2 additions and 2 deletions
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4
misc/paftools.js
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@ -484,7 +484,7 @@ function paf_call(args)
// drop alignments that don't overlap with the current one
var k = 0;
for (var i = 0; i < a.length; ++i)
if (a[0][0] == ctg && a[0][2] > x)
if (a[i][0] == ctg && a[i][2] > x)
a[k++] = a[i];
a.length = k;
// core loop
@ -496,7 +496,7 @@ function paf_call(args)
var cov = 1;
if (m[1] == '*' || m[1] == '+' || m[1] == '-')
for (var i = 0; i < a.length; ++i)
if (a[0][2] > x) ++cov;
if (a[i][2] > x) ++cov;
var qs, qe;
if (m[1] == '=' || m[1] == ':') {
var l = m[1] == '='? m[2].length : parseInt(m[2]);