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r482: increased short-read bandwidth to 100 

This has very minor effect on speed.
This commit is contained in:
Heng Li 2017-10-06 10:20:32 -04:00
parent 2833a9c255
commit c6384ed2c8
2 changed files with 2 additions and 2 deletions
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2
main.c
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@ -6,7 +6,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "getopt.h" #include "getopt.h"
#define MM_VERSION "2.2-r479-dirty" #define MM_VERSION "2.2-r482-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>

2
map.c
View File

@ -90,7 +90,7 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
mo->min_chain_score = 25; mo->min_chain_score = 25;
mo->min_dp_max = 40; mo->min_dp_max = 40;
mo->best_n = 20; mo->best_n = 20;
mo->bw = 50; mo->bw = 100;
mo->mid_occ = 1000; mo->mid_occ = 1000;
mo->max_occ = 5000; mo->max_occ = 5000;
mo->mini_batch_size = 50000000; mo->mini_batch_size = 50000000;