From c6384ed2c81ee65af3606e5ecafef731454c1ad6 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Fri, 6 Oct 2017 10:20:32 -0400 Subject: [PATCH] r482: increased short-read bandwidth to 100 This has very minor effect on speed. --- main.c | 2 +- map.c | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/main.c b/main.c index 9a9da20..38ea3d8 100644 --- a/main.c +++ b/main.c @@ -6,7 +6,7 @@ #include "mmpriv.h" #include "getopt.h" -#define MM_VERSION "2.2-r479-dirty" +#define MM_VERSION "2.2-r482-dirty" #ifdef __linux__ #include diff --git a/map.c b/map.c index 55f426b..1c117e8 100644 --- a/map.c +++ b/map.c @@ -90,7 +90,7 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo) mo->min_chain_score = 25; mo->min_dp_max = 40; mo->best_n = 20; - mo->bw = 50; + mo->bw = 100; mo->mid_occ = 1000; mo->max_occ = 5000; mo->mini_batch_size = 50000000;