r372: default mm_verbose to 1, and change in main
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parent
446bde214d
commit
c07f9f9a49
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@ -4,3 +4,5 @@
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*.a
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*.o
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*.dSYM
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minimap2
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minimap2.c
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3
main.c
3
main.c
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@ -6,7 +6,7 @@
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#include "mmpriv.h"
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#include "getopt.h"
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#define MM_VERSION "2.1.1-r369-dirty"
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#define MM_VERSION "2.1.1-r372-dirty"
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#ifdef __linux__
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#include <sys/resource.h>
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@ -69,6 +69,7 @@ int main(int argc, char *argv[])
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mm_idx_reader_t *idx_rdr;
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mm_idx_t *mi;
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mm_verbose = 3;
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liftrlimit();
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mm_realtime0 = realtime();
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mm_set_opt(0, &ipt, &opt);
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2
misc.c
2
misc.c
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@ -1,6 +1,6 @@
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#include "minimap.h"
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int mm_verbose = 3;
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int mm_verbose = 1;
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int mm_dbg_flag = 0;
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double mm_realtime0;
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9
setup.py
9
setup.py
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@ -1,4 +1,9 @@
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from setuptools import setup, Extension
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try:
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from setuptools import setup, Extension
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except ImportError:
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from distutils.core import setup
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from distutils.extension import Extension
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from Cython.Build import cythonize
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import sys
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@ -16,6 +21,6 @@ setup(
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['python/minimap2.pyx', 'align.c', 'bseq.c', 'chain.c', 'format.c', 'hit.c', 'index.c', 'kalloc.c',
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'ksw2_extd2_sse.c', 'ksw2_exts2_sse.c', 'ksw2_extz2_sse.c', 'ksw2_ll_sse.c', 'kthread.c', 'map.c',
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'misc.c', 'sdust.c', 'sketch.c'],
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extra_compile_args = ['-msse4'],
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extra_compile_args = ['-msse4'], # WARNING: ancient x86_64 CPUs don't have SSE4
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include_dirs = ['.'])])
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)
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