From c047c852ceb41dd2ab5b706381e2ecf9a2b9f4ff Mon Sep 17 00:00:00 2001 From: Carlos de Lannoy Date: Wed, 8 Nov 2017 13:07:01 +0100 Subject: [PATCH] Update README.md 25: changed -x ava-one to -x ava-ont --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 96a8e2b..388a439 100644 --- a/README.md +++ b/README.md @@ -22,7 +22,7 @@ cd minimap2 && make ./minimap2 -ax splice -k14 -uf ref.fa reads.fa > aln.sam # Nanopore Direct RNA-seq ./minimap2 -cx asm5 asm1.fa asm2.fa > aln.paf # intra-species asm-to-asm alignment ./minimap2 -x ava-pb reads.fa reads.fa > overlaps.paf # PacBio read overlap -./minimap2 -x ava-one reads.fa reads.fa > overlaps.paf # Nanopore read overlap +./minimap2 -x ava-ont reads.fa reads.fa > overlaps.paf # Nanopore read overlap # man page for detailed command line options man ./minimap2.1 ```