diff --git a/tex/minimap2.tex b/tex/minimap2.tex index d1013b3..77b6dbc 100644 --- a/tex/minimap2.tex +++ b/tex/minimap2.tex @@ -652,9 +652,9 @@ across the whole genome and have been \emph{de novo} assembled with SMRT reads to high quality. This allowed us to construct an independent truth variant dataset~\citep{Li223297} for ERR1341796. In this evaluation, minimap2 has higher SNP false negative rate -(FNR; 2.5\% of minimap2 vs 2.2\% of BWA-MEM), but fewer false positive SNPs per -million bases (FPPM; 3.0 vs 3.9), lower 2--50bp INDEL FNR (7.3\% vs 7.5\%) and -similar INDEL FPPM (both 1.0). Minimap2 is broadly similar to BWA-MEM in the +(FNR; 2.6\% of minimap2 vs 2.3\% of BWA-MEM), but fewer false positive SNPs per +million bases (FPPM; 7.0 vs 8.8), similar INDEL FNR (11.2\% vs 11.3\%) and +similar INDEL FPPM (6.4 vs 6.5). Minimap2 is broadly comparable to BWA-MEM in the context of small variant calling. \subsection{Aligning long-read assemblies} @@ -717,6 +717,8 @@ Schatz, P. Rescheneder and F. Sedlazeck for pointing out the limitation of BWA-MEM. We are also grateful to minimap2 users who have greatly helped to suggest features and to fix various issues. +\paragraph{Funding\textcolon} NHGRI 1R01HG010040-01 + \bibliography{minimap2} \end{document}