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Release minimap2-2.18 (r1015)

This commit is contained in:
Heng Li 2021-04-09 13:33:34 -04:00
parent 77abafaaf3
commit b6ff332de1
8 changed files with 10 additions and 10 deletions
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2
NEWS.md
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@ -74,7 +74,7 @@ Changes to paftools.js:
Although given the many bug fixes and minor improvements, the core algorithm
stays the same. This version of minimap2 produces nearly identical alignments
to v2.17 except corner cases.
to v2.17 except very rare corner cases.
Now unimap is recommended over minimap2 for aligning long contigs against a
reference genome. It often takes less wall-clock time and is much more

4
README.md
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@ -76,8 +76,8 @@ Detailed evaluations are available from the [minimap2 paper][doi] or the
Minimap2 is optimized for x86-64 CPUs. You can acquire precompiled binaries from
the [release page][release] with:
```sh
curl -L https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2 | tar -jxvf -
./minimap2-2.17_x64-linux/minimap2
curl -L https://github.com/lh3/minimap2/releases/download/v2.18/minimap2-2.18_x64-linux.tar.bz2 | tar -jxvf -
./minimap2-2.18_x64-linux/minimap2
```
If you want to compile from the source, you need to have a C compiler, GNU make
and zlib development files installed. Then type `make` in the source code

4
cookbook.md
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@ -31,8 +31,8 @@ To acquire the data used in this cookbook and to install minimap2 and paftools,
please follow the command lines below:
```sh
# install minimap2 executables
curl -L https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2 | tar jxf -
cp minimap2-2.17_x64-linux/{minimap2,k8,paftools.js} . # copy executables
curl -L https://github.com/lh3/minimap2/releases/download/v2.18/minimap2-2.18_x64-linux.tar.bz2 | tar jxf -
cp minimap2-2.18_x64-linux/{minimap2,k8,paftools.js} . # copy executables
export PATH="$PATH:"`pwd` # put the current directory on PATH
# download example datasets
curl -L https://github.com/lh3/minimap2/releases/download/v2.10/cookbook-data.tgz | tar zxf -

2
main.c
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@ -7,7 +7,7 @@
#include "mmpriv.h"
#include "ketopt.h"
#define MM_VERSION "2.17-r1013-dirty"
#define MM_VERSION "2.18-r1015"
#ifdef __linux__
#include <sys/resource.h>

2
minimap2.1
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@ -1,4 +1,4 @@
.TH minimap2 1 "4 May 2019" "minimap2-2.17 (r941)" "Bioinformatics tools"
.TH minimap2 1 "9 April 2021" "minimap2-2.18 (r1015)" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences

2
misc/paftools.js
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@ -1,6 +1,6 @@
#!/usr/bin/env k8
var paftools_version = '2.17-r982-dirty';
var paftools_version = '2.18-r1015';
/*****************************
***** Library functions *****

2
python/mappy.pyx
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@ -3,7 +3,7 @@ from libc.stdlib cimport free
cimport cmappy
import sys
__version__ = '2.17'
__version__ = '2.18'
cmappy.mm_reset_timer()

2
setup.py
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@ -23,7 +23,7 @@ def readme():
setup(
name = 'mappy',
version = '2.17',
version = '2.18',
url = 'https://github.com/lh3/minimap2',
description = 'Minimap2 python binding',
long_description = readme(),