From b40598fa91d9ff70de4feb8245a3d6d9d49e0bdb Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Fri, 4 Aug 2017 14:51:33 -0400
Subject: [PATCH] added paf2aln.js example

---
 misc/README.md | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/misc/README.md b/misc/README.md
index b50cac9..1a100fe 100644
--- a/misc/README.md
+++ b/misc/README.md
@@ -4,7 +4,10 @@ page][k8].
 
 * [paf2aln.js](paf2aln.js): convert PAF to [MAF][maf] or BLAST-like output for
   eyeballing. PAF has to be generated with minimap2 option `-S`, which writes
-  the aligned sequences to the `cs` tag.
+  the aligned sequences to the `cs` tag. An example:
+  ```sh
+  ../minimap2 -S ../test/MT-*.fa | k8 paf2aln.js /dev/stdin
+  ```
 
 * [mapstat.js](mapstat.js): output basic statistics such as the number of
   non-redundant mapped bases, number of split and secondary alignments and