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fixed typos

This commit is contained in:
Heng Li 2018-01-30 10:11:50 -05:00
parent 43bfa6199d
commit ad18fa490d
1 changed files with 4 additions and 4 deletions
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8
misc/paf2diff.js
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@ -40,9 +40,9 @@ var re_cs = /([:=*+-])(\d+|[A-Za-z]+)/g;
var c, min_cov_len = 10000, min_var_len = 50000, gap_thres = 50, min_mapq = 5;
while ((c = getopt(arguments, "l:L:g:q:")) != null) {
if (c == 'l') min_cov_len = parseInt(getopt.arg);
else if (c == 'L') min_var_len = parseInt(optarg.arg);
else if (c == 'g') gap_thres = parseInt(optarg.arg);
else if (c == 'q') min_mapq = parseInt(optarg.arg);
else if (c == 'L') min_var_len = parseInt(getopt.arg);
else if (c == 'g') gap_thres = parseInt(getopt.arg);
else if (c == 'q') min_mapq = parseInt(getopt.arg);
}
if (arguments.length == getopt.ind) {
@ -55,7 +55,7 @@ if (arguments.length == getopt.ind) {
exit(1);
}
var file = new File(arguments[getopt.ind]);
var file = arguments[getopt.ind] == '-'? new File() : new File(arguments[getopt.ind]);
var buf = new Bytes();
var tot_len = 0, n_sub = [0, 0, 0], n_ins = [0, 0, 0, 0], n_del = [0, 0, 0, 0];