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r131: wrong EOF test; make mb_size <= batch_size

This commit is contained in:
Heng Li 2017-07-01 09:26:09 -04:00
parent d4301736b8
commit a9f089f0aa
3 changed files with 3 additions and 3 deletions
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2
bseq.c
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@ -53,7 +53,7 @@ bseq1_t *bseq_read(bseq_file_t *fp, int chunk_size, int with_qual, int *n_)
size += seqs[n++].l_seq; size += seqs[n++].l_seq;
if (size >= chunk_size) break; if (size >= chunk_size) break;
} }
if (n == 0) fp->is_eof = 1; if (size < chunk_size) fp->is_eof = 1;
*n_ = n; *n_ = n;
return seqs; return seqs;
} }

2
index.c
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@ -279,7 +279,7 @@ mm_idx_t *mm_idx_gen(bseq_file_t *fp, int w, int k, int b, int is_hpc, int mini_
{ {
pipeline_t pl; pipeline_t pl;
memset(&pl, 0, sizeof(pipeline_t)); memset(&pl, 0, sizeof(pipeline_t));
pl.mini_batch_size = mini_batch_size; pl.mini_batch_size = mini_batch_size < batch_size? mini_batch_size : batch_size;
pl.keep_name = keep_name; pl.keep_name = keep_name;
pl.batch_size = batch_size; pl.batch_size = batch_size;
pl.fp = fp; pl.fp = fp;

2
main.c
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@ -10,7 +10,7 @@
#include "minimap.h" #include "minimap.h"
#include "mmpriv.h" #include "mmpriv.h"
#define MM_VERSION "2.0-r129-pre" #define MM_VERSION "2.0-r131-pre"
void liftrlimit() void liftrlimit()
{ {