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r973: fixed compiling errors caused

This commit is contained in:
Heng Li 2020-01-21 10:43:31 -05:00
parent 9dceae59a0
commit a7a01fe5bd
3 changed files with 3 additions and 3 deletions
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2
align.c
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@ -908,6 +908,6 @@ mm_reg1_t *mm_align_skeleton(void *km, const mm_mapopt_t *opt, const mm_idx_t *m
kfree(km, qseq0[0]); kfree(km, qseq0[0]);
kfree(km, ez.cigar); kfree(km, ez.cigar);
mm_filter_regs(opt, qlen, n_regs_, regs); mm_filter_regs(opt, qlen, n_regs_, regs);
mm_hit_sort(km, n_regs_, regs, opt->alt_diff_frac); mm_hit_sort(km, n_regs_, regs, opt->alt_drop);
return regs; return regs;
} }

2
main.c
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@ -7,7 +7,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "ketopt.h" #include "ketopt.h"
#define MM_VERSION "2.17-r972-dirty" #define MM_VERSION "2.17-r973-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>

2
options.c
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@ -35,7 +35,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->min_join_flank_sc = 1000; opt->min_join_flank_sc = 1000;
opt->min_join_flank_ratio = 0.5f; opt->min_join_flank_ratio = 0.5f;
opt->alt_diff_frac = 0.15f; opt->alt_drop = 0.15f;
opt->a = 2, opt->b = 4, opt->q = 4, opt->e = 2, opt->q2 = 24, opt->e2 = 1; opt->a = 2, opt->b = 4, opt->q = 4, opt->e = 2, opt->q2 = 24, opt->e2 = 1;
opt->sc_ambi = 1; opt->sc_ambi = 1;