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r289: changed CLI help only

This commit is contained in:
Heng Li 2017-08-12 12:40:07 -04:00
parent 5a74088b74
commit a23df2dc91
1 changed files with 2 additions and 2 deletions
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4
main.c
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@ -8,7 +8,7 @@
#include "minimap.h" #include "minimap.h"
#include "mmpriv.h" #include "mmpriv.h"
#define MM_VERSION "2.0-r288-dirty" #define MM_VERSION "2.0-r289-dirty"
void liftrlimit() void liftrlimit()
{ {
@ -172,7 +172,7 @@ int main(int argc, char *argv[])
fprintf(stderr, " -X skip self and dual mappings (for the all-vs-all mode)\n"); fprintf(stderr, " -X skip self and dual mappings (for the all-vs-all mode)\n");
fprintf(stderr, " -p FLOAT min secondary-to-primary score ratio [%g]\n", opt.pri_ratio); fprintf(stderr, " -p FLOAT min secondary-to-primary score ratio [%g]\n", opt.pri_ratio);
fprintf(stderr, " -N INT retain at most INT secondary alignments [%d]\n", opt.best_n); fprintf(stderr, " -N INT retain at most INT secondary alignments [%d]\n", opt.best_n);
fprintf(stderr, " -G NUM max intron length (only effective following -x splice) [100k]\n"); fprintf(stderr, " -G NUM max intron length (only effective following -x splice) [200k]\n");
fprintf(stderr, " Alignment:\n"); fprintf(stderr, " Alignment:\n");
fprintf(stderr, " -A INT matching score [%d]\n", opt.a); fprintf(stderr, " -A INT matching score [%d]\n", opt.a);
fprintf(stderr, " -B INT mismatch penalty [%d]\n", opt.b); fprintf(stderr, " -B INT mismatch penalty [%d]\n", opt.b);