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r99: report progress

This commit is contained in:
Heng Li 2017-06-28 23:56:33 -04:00
parent cf703655cb
commit 9fbf7e41e1
2 changed files with 4 additions and 2 deletions
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4
main.c
View File

@ -10,7 +10,7 @@
#include "minimap.h" #include "minimap.h"
#include "mmpriv.h" #include "mmpriv.h"
#define MM_VERSION "2.0-r98-pre" #define MM_VERSION "2.0-r99-pre"
void liftrlimit() void liftrlimit()
{ {
@ -57,7 +57,7 @@ int main(int argc, char *argv[])
{ {
mm_mapopt_t opt; mm_mapopt_t opt;
int i, c, k = 17, w = -1, bucket_bits = MM_IDX_DEF_B, n_threads = 3, keep_name = 1, is_idx, is_hpc = 0, long_idx; int i, c, k = 17, w = -1, bucket_bits = MM_IDX_DEF_B, n_threads = 3, keep_name = 1, is_idx, is_hpc = 0, long_idx;
int minibatch_size = 100000000; int minibatch_size = 200000000;
uint64_t batch_size = 4000000000ULL; uint64_t batch_size = 4000000000ULL;
bseq_file_t *fp = 0; bseq_file_t *fp = 0;
char *fnw = 0; char *fnw = 0;

2
map.c
View File

@ -382,6 +382,8 @@ static void *worker_pipeline(void *shared, int step, void *in)
free(s->seq[i].seq); free(s->seq[i].name); free(s->seq[i].seq); free(s->seq[i].name);
} }
free(s->reg); free(s->n_reg); free(s->seq); free(s->reg); free(s->n_reg); free(s->seq);
if (mm_verbose >= 3)
fprintf(stderr, "[M::%s::%.3f*%.2f] mapped %d sequences\n", __func__, realtime() - mm_realtime0, cputime() / (realtime() - mm_realtime0), s->n_seq);
free(s); free(s);
} }
return 0; return 0;