diff --git a/main.c b/main.c index cc42dec..f621001 100644 --- a/main.c +++ b/main.c @@ -10,7 +10,7 @@ #include "minimap.h" #include "mmpriv.h" -#define MM_VERSION "2.0-r98-pre" +#define MM_VERSION "2.0-r99-pre" void liftrlimit() { @@ -57,7 +57,7 @@ int main(int argc, char *argv[]) { mm_mapopt_t opt; int i, c, k = 17, w = -1, bucket_bits = MM_IDX_DEF_B, n_threads = 3, keep_name = 1, is_idx, is_hpc = 0, long_idx; - int minibatch_size = 100000000; + int minibatch_size = 200000000; uint64_t batch_size = 4000000000ULL; bseq_file_t *fp = 0; char *fnw = 0; diff --git a/map.c b/map.c index bb2e51a..ca3b757 100644 --- a/map.c +++ b/map.c @@ -382,6 +382,8 @@ static void *worker_pipeline(void *shared, int step, void *in) free(s->seq[i].seq); free(s->seq[i].name); } free(s->reg); free(s->n_reg); free(s->seq); + if (mm_verbose >= 3) + fprintf(stderr, "[M::%s::%.3f*%.2f] mapped %d sequences\n", __func__, realtime() - mm_realtime0, cputime() / (realtime() - mm_realtime0), s->n_seq); free(s); } return 0;