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r937: enlarge mm_mapopt_t::flag to 64 bits

This commit is contained in:
Heng Li 2019-04-30 22:30:32 -04:00
parent 189555503a
commit 97f67a2a0a
3 changed files with 3 additions and 3 deletions
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2
main.c
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@ -6,7 +6,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "ketopt.h" #include "ketopt.h"
#define MM_VERSION "2.16-r935-dirty" #define MM_VERSION "2.16-r937-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>

2
minimap.h
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@ -104,9 +104,9 @@ typedef struct {
} mm_idxopt_t; } mm_idxopt_t;
typedef struct { typedef struct {
int64_t flag; // see MM_F_* macros
int seed; int seed;
int sdust_thres; // score threshold for SDUST; 0 to disable int sdust_thres; // score threshold for SDUST; 0 to disable
int flag; // see MM_F_* macros
int max_qlen; // max query length int max_qlen; // max query length

2
python/cmappy.pxd
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@ -10,9 +10,9 @@ cdef extern from "minimap.h":
uint64_t batch_size uint64_t batch_size
ctypedef struct mm_mapopt_t: ctypedef struct mm_mapopt_t:
int64_t flag
int seed int seed
int sdust_thres int sdust_thres
int flag
int max_qlen int max_qlen
int bw int bw
int max_gap, max_gap_ref int max_gap, max_gap_ref