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r881: a recent change reduces sr accuracy

This commit is contained in:
Heng Li 2018-11-05 22:03:59 -05:00
parent 3db5bfe6e5
commit 88c421e8de
2 changed files with 1 additions and 3 deletions
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2
align.c
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@ -594,11 +594,9 @@ static void mm_align1(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int
qs0 = 0, qe0 = qlen;
l = qs;
l += l * opt->a + opt->end_bonus > opt->q? (l * opt->a + opt->end_bonus - opt->q) / opt->e : 0;
l = l < opt->bw? l : opt->bw;
rs0 = rs - l > 0? rs - l : 0;
l = qlen - qe;
l += l * opt->a + opt->end_bonus > opt->q? (l * opt->a + opt->end_bonus - opt->q) / opt->e : 0;
l = l < opt->bw? l : opt->bw;
re0 = re + l < (int32_t)mi->seq[rid].len? re + l : mi->seq[rid].len;
} else {
// compute rs0 and qs0

2
main.c
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@ -6,7 +6,7 @@
#include "mmpriv.h"
#include "ketopt.h"
#define MM_VERSION "2.13-r880-dirty"
#define MM_VERSION "2.13-r881-dirty"
#ifdef __linux__
#include <sys/resource.h>