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larger window size for longer INDELs

This commit is contained in:
Heng Li 2021-04-11 16:08:29 -04:00
parent 9ab95be1bb
commit 86b716448c
1 changed files with 3 additions and 2 deletions
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5
misc/paftools.js
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@ -2828,8 +2828,9 @@ function paf_sveval(args)
if (a1[i][3] < min_size) continue;
++n;
if (a0 == null) continue;
var st = a1[i][0] > win_size? a1[i][0] - win_size : 0;
b = Interval.find_ovlp(a0, st, a1[i][1] + win_size);
var ws = win_size + (a1[i][3]>>1);
var st = a1[i][0] > ws? a1[i][0] - ws : 0;
b = Interval.find_ovlp(a0, st, a1[i][1] + ws);
var match = false;
for (var j = 0; j < b.length; ++j) {
if (b[j][2] * a1[i][2] > 0)