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fixed two mappy warnings

This commit is contained in:
Heng Li 2018-03-26 15:12:54 -04:00
parent 4740423afa
commit 7938ed4893
2 changed files with 3 additions and 2 deletions
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2
python/cmappy.h
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@ -123,7 +123,7 @@ static char *mappy_fetch_seq(const mm_idx_t *mi, const char *name, int st, int e
if (en < 0 || en > mi->seq[rid].len) if (en < 0 || en > mi->seq[rid].len)
en = mi->seq[rid].len; en = mi->seq[rid].len;
s = (char*)malloc(en - st + 1); s = (char*)malloc(en - st + 1);
*len = mm_idx_getseq(mi, rid, st, en, s); *len = mm_idx_getseq(mi, rid, st, en, (uint8_t*)s);
for (i = 0; i < *len; ++i) for (i = 0; i < *len; ++i)
s[i] = "ACGTN"[(uint8_t)s[i]]; s[i] = "ACGTN"[(uint8_t)s[i]];
s[*len] = 0; s[*len] = 0;

3
python/cmappy.pxd
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@ -59,7 +59,8 @@ cdef extern from "minimap.h":
mm_idx_seq_t *seq mm_idx_seq_t *seq
uint32_t *S uint32_t *S
mm_idx_bucket_t *B mm_idx_bucket_t *B
void *km, *h void *km
void *h
ctypedef struct mm_idx_reader_t: ctypedef struct mm_idx_reader_t:
pass pass