diff --git a/python/minimap2.py b/python/minimap2.py index 2f89fcd..ce396e2 100755 --- a/python/minimap2.py +++ b/python/minimap2.py @@ -1,6 +1,7 @@ #!/usr/bin/env python -import sys, getopt +import sys +import getopt import mappy as mp def main(argv): @@ -17,7 +18,8 @@ def main(argv): print(" -c output the cs tag") sys.exit(1) - preset, min_cnt, min_sc, k, w, bw, out_cs = None, None, None, None, None, None, False + preset = min_cnt = min_sc = k = w = bw = None + out_cs = False for opt, arg in opts: if opt == '-x': preset = arg elif opt == '-n': min_cnt = int(arg)